Biol 591
Introduction to Bioinformatics
Fall 2003
August
September
October
November
December
Monday
Wednesday
Friday
3: NO CLASS
(but consultations highly encouraged)
5:
Scenario 6: Microarray analysis
Introduction:
The Story
Presentation:
Microarray Technology
Exam 2 due
7:
Scenario 6: Microarray analysis
Read
Golub et al (1999)
Notes:
Help with Golub et al
Questionnaire:
(
HTML
)
Presentation:
Distinguishing clinical subgroups
10:
Scenario 6: Microarray analysis
Write program to predict class distinction
starting from
shell
Notes:
Hints and advice
Questionnaire:
(
HTML
)
12:
Scenario 6: Microarray analysis
Problem Set 6
:
Focus on 6 and 8
Seminar:
Jen Fettweis, 12:00 Sanger 8-036
14:
Scenario 7: Protein threading
Introduction:
The Story
Notes:
Protein overexpression
Notes:
Resources for protein threading
Questionnaire:
(
HTML
)
17:
Scenario 7: Protein threading
Notes:
Threading program and beyond
Questionnaire:
(
HTML
)
19:
Scenario 7: Protein threading
Notes:
(Same as Monday's)
Questionnaire:
(
HTML
)
Scenario 8: Markov models
Introduction:
The Story
21:
Scenario 7: Protein threading
Problem Set 7
: Focus on 7.4 and 7.3
24:
Scenario 8: Markov models
Notes:
Detecting pathogenicity islands
Questionnaire:
(
HTML
)
26:
Scenario 7: Protein threading
Notes:
Son of ThreadProtein
Scenario 8: Markov models
28: THANKSGIVING