I. Basic Information

A. Your name 

A. Were you able to download and run Clustal successfully?  Select Yes No

B. Were you able to run ThreadProtein successfully?  Select Yes No

C. Were you able to upload the results into Protein Explorer and make sense out of what you saw?  Select Yes No
 

Comments for questions II.A through II.B:

A. Do you feel comfortable about your understanding of modules, to the extent they're used by ThreadProtein?  Select Very comfortable Moderately comfortable Somewhat comfortable Not comfortable

B. Do you understand what in the original PDB file is changed by ThreadProtein?  Select Very much so Moderately so Somewhat Not at all

C. How comfortable are you regarding how ThreadProtein stores information in $comparison_summary?  Select Very comfortable Moderately comfortable Somewhat comfortable Not comfortable

Comments for questions III.A through III.C:

A. Do you understand the format of the file containing mutation position information?  Select Yes No

B. How far are you along in modifying ThreadProtein.pl so that it reads in the file containing mutation position information?  Select Did it Good progress Got started No progress

C. How far are you along in making a function to convert M. loti coordinates into alignment coordinates?  Select Did it I see how to do it I sort of see how to do it No progress

D. How far are you along in modifying ThreadProtein.pl so that it incorporates mutation positional information into the overall summary?  Select Did it Good progress Got started No progress

E. How far are you along in modifying ThreadProtein.pl so that it produces a PDB file with information regarding mutation positions?  Select Did it Good progress Got started No progress

Comments for question IV: