| Biol 591 |
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Fall 2002
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| 2 | 4: Problem Set Discussion
IntroM : especially #3, 8, 14, 17 IntroP: especially #4, 5 |
6: Scenario 1: Molecular biology
Notes (PDF) (Questions) Problem Set: PS1M (PDF) |
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| 9: Scenario 1: Programming/Tools
Notes (html) (Questions) Problem Set: PS1P (html) |
11: Problem Set Discussion
PS1M: especially #1, 4, 7 PS1P: # |
13: Intro to Scenario
2
Read Scenario story (html)(Questions) Read notes (PDF) Skim article (see instructions) Problem Set: PS2M (PDF) |
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| 16: Scenario 2: Parsing massive output
Download Blast to own computer Download databases to own computer Run E. coli X vs E. coli K12 Read notes (html)(Questions) Problem Set: PS2P (html) |
18: Problem Set Discussion
PS2M: especially 1, 5, and 6 PS2P: especially 2, 3, and 7 |
20: Scenario 2: Parsing
You tell us what needs discussion (Questions) Intro to Scenario 3: Sequence comparison Actively follow the story to Scenario 3 |
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| 23: Scenario 3: How Blast works
Notes (PDF) (Questions) |
25: Scenario 3: BlastN - the program
Notes: 1D arrays (html) Notes: 2D Array (html) (Questions) |
27: Scenario 3: Scoring & protein searches
Notes: Progress; scoring; protein alignment (PDF) (Questions) Problem Set: PS3 (PDF) |
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| 30: General Discussion of Problems/Study
Questions
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