Biol 591 
Introduction to Bioinformatics
Fall 2002 

    August September October November December

Monday
  
Wednesday
  
Friday
    2: General Discussion of Problems/Study Questions
    Your choice! (click here to send choices)
     Exam 1 available at end of class		   4: NO CLASS
     (consultations available)
7: Exam 1 due
    Scenario 4		   9: Perl topics
    (Example programs here.)		   11: More Perl topics
      Notes on the debugger and more on arrays
14: Intro to Scenario 4: Metabolic modeling|   16: Scenario 4: Metabolic modeling
     Read Voit (2002)
     Biological example (PowerPoint)		   18: Scenario 4: Metabolic modeling
      Read Eisenthal & Cornish-Bowden (1998)
      Problem Set: PS4 (html)
      Work with actual model (programs here)
21: Intro to Scenario 5: Position-specific
          scoring matrices
     Notes (PDF)		   23: Scenario 5: PSSM
      Perl concepts (Notes)
      (Problem Set)		   25: Problem Set 4
      Problem Set  5P
      Problem Set 5B (focus on 5B.2 & 5B.4)
28: Scenario 6: Statistical analysis 
      of microarray data
      Read Golub et al (1999)
     General statistical considerations (ppt)		   30: Intro to Scenario 6
 		    

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