| BNFO 301 |
Items for each day generally indicate what is to be done before class |
Spring 2012
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| 1: Genome Sequencing
Notes - Overview of genome sequencing Notes - Where sequences come from Article: Myers et al. (2000) + Tour Presentation: Why Study Bacteriophage? Questionnaire Lab - (See Jan 30) Please e-mail responses to any part of Problem Set 1 by end of Friday |
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| 6: Genome Sequencing
Article: Myers et al. (2000) + Tour (especially SQ14 of the tour) Questionnaire Lab: Sequence Assembly example Problem Set 2: Molec Biol Investigations (by request) Problem Set 3: Genome sequencing |
8: Intro to Molecular Biology
Notes: Gene regulation and phage Presentation: Myers tour, Study Question 14 Presentation: Probability Questionnaire Lab - (See Feb 6) Please e-mail responses to any part of Problem Set 2 by end of Friday |
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| 13: Intro to Molecular Biology Article: Madsen et al. (1999) + Tour Discussion: Problem Set 3 (Genome sequencing) Questionnaire Lab: Problem Set 3 (Genome sequencing) |
15: General problem session Questionnaire - What questions to discuss? Lab - (See Feb 13) Special Review Session: (if requested) Exam 1 distributed < 6:15 PM What to expect Ground rules Part I due Friday, Feb 17, 5:30 PM |
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| 20: Exam 1 due 8:30 AM Post-exam questionnaire Genome Analysis (no reading for today) Post-mortem: Exam 1 Lab: Intro to BioBIKE Notes: Introduction to mapping Notes: Elements of a loop Problem Set 4: Practice with loops and mapping |
22: Genome Analysis Notes: Search for FMRP in Drosophila Notes: Introduction to mapping Notes: Elements of a loop Post-mortem: Exam 1 (continued) Questionnaire Lab - (See Feb 20) Please e-mail responses to any part of Problem Set 4 by end of Friday |
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| 27: Genome Analysis Article - Hatfull et al (2008) review + tour (Part I and Part II) Questionnaire Availability Questionnaire - needed ASAP for research groupings Lab: Intro to BioBIKE and Statistics Problem Set 5 - Blast and Dotplot OR Tour - Was Mendel Right? (Part I and Part II) Problem Set 6 - Statistics |
29:
Genome Analysis Introduction: Research groups Article: Hatfull et al (2008) review + tour (Parts I and II) Questionnaire Research groups Lab - (See Feb 27) Please e-mail responses to EITHER Problem Set 5 OR Problem Set 6 (your choice) by end of Friday |