| BNFO 301 |
Items for each day generally indicate what is to be done before class |
Spring 2014
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| 4: Genome Sequencing
Notes: Where sequences come from Introduction to Personal Programming Notes: Introduction to mapping Problem Set 3: Mapping and loops (due Feb 7) Questionnaire |
6: Genome Sequencing
Tour:Myers et al (2000) Presentation: Probability and genomes (slide 100 to end) Example: Sequence Assembly simplified Introduction to Personal Programming Notes: Elements of a loop Problem Set 3: Mapping and loops (due Feb 7) Questionnaire |
7:
PS3 |
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| 11: Genome Sequencing
Tour: Myers et al (2000) (particularly SQ 10 & 14) Tour: Was Mendel Right? (Part I, biological problem) Tour: Was Mendel Right? (Part II, functions and statistics) Problem Set 4: Genome assembly & statistics Questionnaire |
13: Genome Analysis
Notes: Shine & Dalgarno (1975) Problem Set 4: Genome assembly & statistics Questionnaire |
14:
PS4 |
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| 18: Genome Analysis
Notes: Shine & Dalgarno (1975) Exam 2 availability survey Questionnaire |
20: General problem session Questionnaire - What questions to discuss? Exam 2 distributed < 6:15 PM What to expect Ground rules Part I due any time Saturday, Feb 23 |
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| 25: Exam 1 continues
NO CLASS Individual meetings (Mon-Wed) |
27: Research Project
Post-exam questionnaire Exam 2 Part II due 8:30 AM Discussion: Exam 1 retrospective Presentation: Overview of Research Groups Advice: How to pursue a project |