BNFO 301 
Introduction to Bioinformatics
Spring 2010 

January February March April May

Monday
 
Wednesday
   
1: Genome Analysis
     Article - Hatfull et al (2008) review + tour (Part I and Part II)
     Questionnaire
     Lab: Intro to BioBIKE
             Functions
             Problem Set 5 - Blast and Dotplots
  3: Genome Analysis
     Tour - Was Mendel Right? (Part I and Part II)
     Questionnaire
     Problem Set 4: Practice with loops and mapping
          Please hand in by end of Friday
   
8: Genome Analysis
     Article - Rohwer and Edwards (2002) + tour (Part I)
      Questionnaire
      Lab: Statistics and biological problems
             Tour - Was Mendel Right? (part I and part II)
             Problem Set 6 - Statistics and loops in context

  10: Genome Analysis
      Article - Rohwer and Edwards (2002) + tour (Part I; Part II in class)
      Questionnaire
      Problem Set 5 - Blast and Dotplots
          Please hand in by end of Friday
      Summary - Rough draft of summary
          Please hand in sometime before or during break
   
15: SPRING BREAK
  17: SPRING BREAK
   
22: Genome Analysis
      Article - Gomathi et al (2007) + tour
      Questionnaire
      Lab: Problem Set 7: Genome analysis
  24: Genome Analysis
      Article - Gomathi et al (2007) + tour
      Questionnaire
   
29: Genome Analysis
      Article - Karlin (2001) + tour
      Questionnaire
      Group meeting questionnaire
      Lab: Problem Set 7 and others
  31: General problem session
      Questionnaire - What questions to discuss?
      Group meeting questionnaire
      Special Review Session: 10:00 BNFO Computer Lab
      Special Review Session: 11:00 BNFO Computer Lab
      Exam 2 distributed
               What to expect
               Ground rules