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ARODZ BIOINFORMATICS LAB
labpublications  
 
  • T. Arodz, P.M. Plonka
    Effects of point mutations on protein structure are nonexponentially distributed
    Proteins: Structure, Function and Bioinformatics, 80:1780-1790, Wiley, 2012
     
  • W. Czech, W. Dzwinel, S. Goryczka, T. Arodz, A.Z. Dudek
    Exploring Complex Networks with Graph Investigator Research Application
    Computing and Informatics, 30:381-410, IISAS, 2011
     
  • T. Arodz
    Conservation of edge essentiality profiles in metabolic networks across species
    in: "First International Conference on Complex Sciences, Complex 2009",
    LNICST, Vol. 5, pp. 1865-1976. Springer-Verlag, 2009
     
  • T. Arodz
    Clustering Species using Topological Measures of Edge Essentiality in Metabolic Networks
    in: BioSysBio 2009
     
  • T. Arodz
    Clustering Organisms Using Metabolic Networks
    in: Bubak, M., van Albada, G. D., Dongarra, J., Sloot, P.M.A. (Editors) "Computational Science - ICCS 2008",
    Lecture Notes in Computer Science, Vol. 5102, pp. 527-534. Springer-Verlag, 2008
     
  • T. Arodz, A. Z. Dudek
    Multivariate Modeling and Analysis in Drug Discovery
    Current Computer-Aided Drug Design, 3(4):240-247, Bentham Science, 2007
     
  • T. Arodz, D. A. Yuen, A. Z. Dudek
    Ensemble of Linear Models for Predicting Drug Properties
    Journal of Chemical Information and Modeling, 46(1):416-423, American Chemical Society, 2006
     
  • A. Z. Dudek, T. Arodz, J. Galvez
    Computational Methods in Developing Quantitative Structure-Activity Relationships (QSAR): A Review
    Combinatorial Chemistry & High Throughput Screening, 9(3):213-228, Bentham Science, 2006
     
  • T. Arodz, M. Kurdziel, T.J. Popiela, E.O.D. Sevre, D.A. Yuen
    Detection of Clustered Microcalcifications in Small Field Digital Mammography
    Computer Methods and Programs in Biomedicine, 81(1):56-65, Elsevier, 2006
     
  • S. Goryczka, T. Arodz
    Complex-network-based Methodology for Analysis of Biomedical Data
    Bio-Algorithms and Med-Systems, 2(3):19-26, CM UJ, 2006
     
  • T. Arodz
    Invariant Object Recognition Using Radon-based Transform
    Computing and Informatics, 24(2):183-199, IISAS, 2005
     
  • T. Arodz, M. Kurdziel, E.O. D. Sevre, D.A. Yuen
    Pattern Recognition Techniques for Automatic Detection of Suspicious-looking Anomalies in Mammograms
    Computer Methods and Programs in Biomedicine, 79(2):135-149, Elsevier, 2005
     
  • T. Arodz
    Training Set Size in Ensemble Feature Selection for Clinical Proteomics
    Bio-Algorithms and Med-Systems, 1(1/2):107-110, CM UJ, 2005
     
  • W. Dzwinel, K. Boryczko, T. Arodz, M. Kurdziel
    Computer-based Methods for Breast Cancer Detection in Mammograms
    Bio-Algorithms and Med-Systems, 1(1/2):287-290, CM UJ, 2005
     
  • T. Arodz
    Boosting the Fisher Linear Discriminant with Random Feature Subsets
    in: Kurzynski, M., Wozniak, M., Puchala, E., Zolnierek, A. (Editors) "Computer Recognition Systems - CORES'05",
    Advances in Soft Computing, pp. 79-86. Springer-Verlag, 2005
     
  • T. Arodz
    Margin-based Diversity Measures for Ensemble Classifiers
    in: Kurzynski, M., Wozniak, M., Puchala, E., Zolnierek, A. (Editors) "Computer Recognition Systems - CORES'05",
    Advances in Soft Computing, pp. 71-78. Springer-Verlag, 2005
     
  • T. Arodz, K. Boryczko, W. Dzwinel, M. Kurdziel, D. A. Yuen
    Visual Exploration of Multidimensional Feature Space of Biological Data
    abstract in: IEEE Visualization 2005 - (VIS'05), p. 90, 2005
     
  • B. Balis, M. Bubak, W. Funika, R. Wismueller, M. Radecki, T. Szepieniec, T. Arodz, M. Kurdziel
    Grid Environment for On-line Application Monitoring and Performance Analysis
    Scientific Programming, 12(4):239-251, IOS Publishers, 2004
     
  • T. Arodz
    On New Radon-based Translation, Rotation and Scaling Invariant Transform for Face Recognition
    in: Bubak, M., van Albada, G.D., Sloot, P.M.A., Dongarra. J. (Editors) "Computational Science - ICCS'2004",
    Lecture Notes in Computer Science, Vol. 3039, pp. 9-17, Springer-Verlag, 2004
     
  • B. Balis, M. Bubak, W. Funika, R. Wismueller, M. Radecki, T. Szepieniec, T. Arodz, M. Kurdziel
    Performance Evaluation and Monitoring of Interactive Grid Applications
    in: Kranzmuller, D., Kacsuk, P., Dongarra, J. (Editors) "Recent Advances in Parallel Virtual Machine and Message Passing Interface",
    Lecture Notes in Computer Science, Vol. 3241, pp. 345-352, Springer-Verlag, 2004
     
  • M. Bubak, W. Funika, R. Wismueller, T. Arodz, M. Kurdziel
    Performance measurement model in the G-PM tool
    in: Bubak, M., van Albada, G.D., Sloot, P.M.A., Dongarra. J. (Editors) "Computational Science - ICCS'2004",
    Lecture Notes in Computer Science, Vol. 3036, pp. 462-465, Springer-Verlag, 2004
     
  • R. Wismuller, M. Bubak, W. Funika, T. Arodz, M. Kurdziel
    Support for User-Defined Metrics in the On-line Performance Analysis Tool G-PM
    in: Dikaiakos, M.D. (Editor) "Grid Computing"
    Lecture Notes in Computer Science, Vol. 3165, pp. 159-168, Springer-Verlag, 2004
     
  • M. Bubak, W. Funika, R. Wismueller, T. Arodz, M. Kurdziel
    The G-PM Tool for Grid-oriented Performance Analysis
    in: Fernandez Rivera, F., Bubak, M., Gomez Tato, A., Doallo, R. (Editors) "Grid Computing. First European Across Grids Conference",
    Lecture Notes in Computer Science, Vol. 2970, pp. 240-248, Springer-Verlag, 2004
     
  • T.J. Popiela, A. Urbanik, T. Arodz, M. Kurdziel
    Computer-aid system for the detection of clustered microcalcifications in digital mammography
    in: Proc. XXXVII Polish Congress of Radiology, Polish Journal of Radiology, 69(S1):67-68, 2004
     
  • M. Bubak, W. Funika, R. Wismuller, T. Arodz, M. Kurdziel
    Performance Measurement for Interactive Applications in CrossGrid
    in: Bubak, M., Turala, M., Wiatr, K. (Editors) "Proc. Cracow Grid Workshop '04", pp. 169-175, ACC Cyfronet AGH, Krakow, 2005
     
  • B. Balis, M. Bubak, W. Funika, M. Radecki, T. Szepieniec, R. Wismueller, T. Arodz, M. Kurdziel
    A Concept of a Monitoring Infrastructure for Workflow-Based Grid Applications
    in: Bubak, M., Noga, M., Turala, M. (Editors) "Proc. Cracow Grid Workshop '03", pp. 136-141, ACC Cyfronet AGH, Krakow, 2004
     
  • M. Bubak, W. Funika, R. Wismuller, T. Arodz, M. Kurdziel
    The G-PM Performance Measurement Tool for Interactive Grid Applications
    in: Bubak, M., Noga, M., Turala, M. (Editors) "Proc. Cracow Grid Workshop '03", pp. 227-234, ACC Cyfronet AGH, Krakow, 2004
     
  • M. Bubak, W. Funika, R. Wismuller, T. Arodz, M. Kurdziel
    Performance Analysis of Grid Interactive Applications with G-PM Tool
    in: Bubak, M., Noga, M., Turala, M. (Editors) "Proc. 2nd Cracow Grid Workshop", ACC Cyfronet AGH, Krakow, 2003