BNFO 301 
Introduction to Bioinformatics
Questionnaire on notes: Genome Sequencing
(please press SUBMIT button when finished)
WARNING! Please don't use double quoatation marks in your answers.
(The questionnaire program dies when it encounters them!)
Spring 2013 


If you encounter a question you've answered in a previous questionnaire and your answer hasn't changed, feel free to ignore the question.
Exception: Please continue to give your name, even if it hasn't changed.

I. Basic Information

A. Your name 
II. BioBIKE
What specific problems you've encountered would be helpful to you for us to discuss in class?
III. Problem Set 2 (Molecular Investigations)
You'll be getting back feedback on your responses to Problem Set 2.
Apart from that, is there anything concerning the problem set you think would warrent discussion in class?
     
IV. Genome Sequencing

A. DNA libraries, dideoxy sequencing, shotgun genome assembly,... OK now?
     

B. How far have you gotten in the tour of Myers et al (2000)?  

C. Are there any particular study questions in that tour that you think warrant class discussion? How about SQ 10 and 14?

D. Do you see how the basic tools to calculate probability can help you determine the degree of coverage of a genome?

E. Comments, questions, concerns regarding Myers et al?
     

V. Mapping and Loops

A. How far did you get in the notes concerning mapping and loops?
B. Needless to say, the notes work much better if you try each example in BioBIKE yourself. Have you done so?
C. What concerns do you have regarding mapping and loops?
     

VI. Miscellaneous
Any other comments, questions, suggestions, or concerns you may have?

Thanks!

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