| BNFO 301 |
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Spring 2009
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| 1: No class
Individual meetings Mon-Fri |
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| 6: Viral Metagenome Project - Initial Analysis
Notes: Initial analysis of reads Questionnaire Lab: Problem Set 6: Initial Analysis (especially Question 1) Pattern matching |
8: No class
Individual meetings Mon-Fri |
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| 13: Metagenome Project and Genome Evolution Read: Howe et al (2001). Trends in Genetics 17:147-152 Manuscript Evolution Skim: Rohwer & Edwards (2002). J Bacteriology 184:4529-4535. The Phage Proteomic Tree: a Genome-Based Taxonomy for Phage Questionnaire Lab: Build a sequence analysis tool Problem Set 7: Phylogenetic Analysis |
15: No class
Individual meetings Mon-Fri |
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| 20: Metagenome Project and Genome Evolution I don't know... you tell me! Questionnaire Lab: Analysis of your sequence Problem Set 7: Phylogenetic Analysis |
22: No class
Individual meetings Mon-Fri |
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| 27: General problem session Questionnaire - What questions should we discuss? Exam 1 distributed at end of day. Due end of Friday. What to expect Ground rules Lab: Review Session |
29: No class
Individual meetings Mon-Fri (to discuss projects and exam) |