BNFO 301
Introduction to Bioinformatics
Questionnaire on: PSSMs and p53
(please press SUBMIT button when finished)
Spring 2006

I. Basic Information

A. Your name 
II. Hoh et al 2002
A. How comfortable are you with the meaning of the consensus p53-binding sequence given in the Introduction

B. How comfortable are you in understanding the data of el-Deiry et al and Funk et al? 

C. How comfortable are you with deriving Hoh et al's Table 1 from the data of el-Deiry and Funk (never mind how tedious it would be to do actually do this)? 

D. How comfortable are you with what the filter table is and why it exists? 

E. Do you see how pseudo-counts could address the same problem? 

F. How comfortable are you with interpretting the results of Table 3? 

G. How comfortable are you with interpretting the results of Table 4 and the supplemental data online? 

H. Choose a study question if you want it discussed in class:

     SQ1 SQ2 SQ3 SQ4 SQ5 SQ6 SQ7 SQ8 SQ9 SQ10 SQ11 SQ12 SQ13
 
Comments re
Hoh et al

III. Miscellaneous
A. Old business: What do you need discussed from last week's notes?
 
B. Any other comments?

 

 
Thanks!
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