BNFO 301
Introduction to Bioinformatics
Questionnaire on: Genome Sequencing and Genome Analysis
(please press SUBMIT button when finished)
Spring 2006

I. Basic Information

A. Your name 
II. Romp through Myers et al (2000) [Repeated by popular demand]
A. How comfortable are you in reading the first part of this article (first four pages)? 

B. Did you have a chance to go through some of the resources given in Part 1 of the notes? 

C. How useful did you find those resources? 

D. Did you have a chance to go through some of the questions given in Part 2 of the notes? 

E. How useful did you find those questions? 

F. Choose up to five study questions that you would most like discussed in class:

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G. Think of at least three questions of your own that come to mind in reading the article (list below)
 
Comments for II: Myers et al
III. How Are Genomes Analyzed?
A. How comfortable are you with using GeneMark and with what it gives you? 

B. How comfortable are you with using Kyte-Doolittle hydropathy plots and with what they gives you? 

C. How comfortable are you with using DAS and with what it gives you? 

D. How comfortable are you with using SMART and with what it gives you? 

E. How comfortable are you with using Blast as described to get additional information about a sequence? 

F. Choose up to five study questions that you would most like discussed in class:

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Comments for III: Genome analysis


IV. BioBIKE

A. How comfortable are you in understanding error messages within BioBIKE and fixing the kind of errors from Problem Set 2 that we went over in lab? 

B. How comfortable are you with the issues raised in the web sections on The BioBIKE Listener and Basic Syntax? 

C. What issues would you like discussed? (List below)
 
Comments for IV:
BioBIKE

IV. Meta-questions
A. I understand that you will be presenting a report in one weeks on your findings regarding some mysterious sequence.
    How are you NOW with that? 

B. Put here any miscellaneous comments, questions, suggestions, concerns you may have.

 

Thanks!

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