BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= thrL, thr operon leader peptide, Escherichia coli O157:H7 (EDL933) (27 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters ***** No hits found ****** Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.311 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24653 Number of Sequences: 4289 Number of extensions: 48 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 27 length of database: 1,355,879 effective HSP length: 3 effective length of query: 24 effective length of database: 1,343,012 effective search space: 32232288 effective search space used: 32232288 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 79 (35.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= thrA, aspartokinase I, homoserine dehydrogenase I, Escherichia coli O157:H7 (EDL933) (820 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0002, aspartokinase I, homoserine dehydrogenase I, Escheric... 1563 0.0 b3940, aspartokinase II and homoserine dehydrogenase II, Esc... 330 4e-091 b4024, aspartokinase III, lysine sensitive, Escherichia coli... 184 3e-047 b0171, uridylate kinase, Escherichia coli K12-MG1655 42 3e-004 >b0002, aspartokinase I, homoserine dehydrogenase I, Escherichia coli K12-MG1655 Length = 820 Score = 1563 bits (4046), Expect = 0.0 Identities = 804/820 (98%), Positives = 805/820 (98%) Query: 1 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA 60 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA Sbjct: 1 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA 60 Query: 61 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA 120 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA Sbjct: 61 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA 120 Query: 121 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP 180 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP Sbjct: 121 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP 180 Query: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV Sbjct: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD Sbjct: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 Query: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF Sbjct: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 Query: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL 420 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL Sbjct: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL 420 Query: 421 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQXXXXXXXXXXXXXXAL 480 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQ AL Sbjct: 421 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL 480 Query: 481 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL 540 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL Sbjct: 481 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL 540 Query: 541 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSR 600 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYH LR+AAEKSR Sbjct: 541 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR 600 Query: 601 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA 660 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA Sbjct: 601 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA 660 Query: 661 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA 720 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA Sbjct: 661 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA 720 Query: 721 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF 780 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF Sbjct: 721 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF 780 Query: 781 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 820 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV Sbjct: 781 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 820 >b3940, aspartokinase II and homoserine dehydrogenase II, Escherichia coli K12-MG1655 Length = 810 Score = 330 bits (845), Expect = 4e-091 Identities = 242/821 (29%), Positives = 402/821 (48%), Gaps = 44/821 (5%) Query: 5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64 KFGG+S+A+ + +LRVA I+ ++ + V+SA TN L+ ++ + + + + + Sbjct: 16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74 Query: 65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALI 123 R + +L++GL A+ L + FV + GI+ D++ A ++ Sbjct: 75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVSDLERLAALLDSGIN------DAVYAEVV 126 Query: 124 CRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADH 183 GE S +M+ VL +G +D E L A + + E ++ H Sbjct: 127 GHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAER---AAQPQVDEGLSYPLLQQLLVQH 183 Query: 184 ---MVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 +++ GF + N GE V+LGRNGSDYSA + A IW+DV GVY+ DPR+V Sbjct: 184 PGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243 Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 DA LL + EA EL+ A VLH RT+ P++ +I ++ + P G++R Sbjct: 244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQ-----GSTRI 298 Query: 301 EDELP----VKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEY 356 E L + +++ +++ + P + + + RA++ + + + Sbjct: 299 ERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQ 358 Query: 357 SISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKF 416 + FC A + + E GL L + + LA++++VG G+ +F Sbjct: 359 LLQFCYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGVTRNPLHCHRF 411 Query: 417 FAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQXXXXXXXXXXXX 476 + L + Q S+ V+ + ++ HQ +F ++ Sbjct: 412 WQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFGKGNI 469 Query: 477 XXALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQAKEP 531 LE R+QS L + + + GV +S+ L + GL+ L + +E + E Sbjct: 470 GSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVEQDEE 529 Query: 532 FNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHL 591 L ++ + + V++D T+SQ +ADQY DF GFHV++ NK A S + Y Sbjct: 530 ----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQ 585 Query: 592 LRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGM 651 + A EK+ R +LY+ VGAGLP+ +++L+++GD ++ SGI SG+LS++F + D + Sbjct: 586 IHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSV 645 Query: 652 SFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNA 711 F+E A + G TEPDPRDDLSG DV RKL+ILARE G +E + +E ++PA Sbjct: 646 PFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEG 705 Query: 712 EGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKV 771 G + F N +L++ R+ AR+ G VLRYV D +G RV + V + PL + Sbjct: 706 -GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHPLASL 764 Query: 772 KNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812 +N A S +Y+ PLV+RG GAG DVTA + +D+ R Sbjct: 765 LPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805 >b4024, aspartokinase III, lysine sensitive, Escherichia coli K12-MG1655 Length = 449 Score = 184 bits (467), Expect = 3e-047 Identities = 142/471 (30%), Positives = 228/471 (48%), Gaps = 41/471 (8%) Query: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQ---- 58 V KFGGTSVA+ + R ADI+ S+A V VLSA A ITN LVA+ E G+ Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVRLV--VLSASAGITNLLVALAEGLEPGERFEK 63 Query: 59 -DALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCP-- 115 DA+ NI F + + + + +I+ +L I++L + Sbjct: 64 LDAIRNIQ-------------------FAILERLRYPNVIREEIERLLENITVLAEAAAL 104 Query: 116 ---DSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTR 172 ++ L+ GE MS + +L R D + + + + DIA Sbjct: 105 ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAE 164 Query: 173 RIAASRIPA--DHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVD 230 A +P + +V+ GF KG LGR GSDY+AA+LA L A +IWTDV Sbjct: 165 LAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 Query: 231 GVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQA 290 G+YT DPR V A+ + +++ EA E++ FGAKVLHP T+ P + IP + ++ +P+A Sbjct: 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRA 284 Query: 291 PGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLIT 350 GTL+ ++ E+ + ++ N + ++ M G A VF ++R ISV LIT Sbjct: 285 GGTLV-CNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT 343 Query: 351 QSSSEYSISFCVPQSDCV-RAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTL 409 +SE S++ + + + + + +EL L + V E LA+++++G+ + Sbjct: 344 --TSEVSVALTLDTTGSTSTGDTLLTQSLLMEL--SALCRVEVEEGLALVALIGNDLSKA 399 Query: 410 RGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLF 460 G+ + F L NI + I G+S ++ +V +DA V+ H LF Sbjct: 400 CGVGKEVFGVLEPFNIRM--ICYGASSHNLCFLVPGEDAEQVVQKLHSNLF 448 >b0171, uridylate kinase, Escherichia coli K12-MG1655 Length = 241 Score = 41.6 bits (96), Expect = 3e-004 Identities = 28/97 (28%), Positives = 44/97 (44%), Gaps = 8/97 (8%) Query: 199 LVVLGRNGSDYSAAVLAACLR-----ADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQE 253 +++ G+ + AACLR AD T VDGV+T DP + P A + + ++Y E Sbjct: 132 VILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPTATMYEQLTYSE 191 Query: 254 AMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQA 290 +E KV+ T ++P + N P A Sbjct: 192 VLEKE---LKVMDLAAFTLARDHKLPIRVFNMNKPGA 225 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2018782 Number of Sequences: 4289 Number of extensions: 82388 Number of successful extensions: 248 Number of sequences better than 1.0e-003: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 235 Number of HSP's gapped (non-prelim): 4 length of query: 820 length of database: 1,355,879 effective HSP length: 46 effective length of query: 774 effective length of database: 1,158,585 effective search space: 896744790 effective search space used: 896744790 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= thrB, homoserine kinase, Escherichia coli O157:H7 (EDL933) (310 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0003, homoserine kinase, Escherichia coli K12-MG1655 599 e-173 >b0003, homoserine kinase, Escherichia coli K12-MG1655 Length = 310 Score = 599 bits (1545), Expect = e-173 Identities = 296/310 (95%), Positives = 298/310 (95%) Query: 1 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVESAETFSLNNLGRFADKLPSEP 60 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVE+AETFSLNNLGRFADKLPSEP Sbjct: 1 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEP 60 Query: 61 RENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND 120 RENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND Sbjct: 61 RENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND 120 Query: 121 TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI 180 TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI Sbjct: 121 TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI 180 Query: 181 KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP 240 KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP Sbjct: 181 KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP 240 Query: 241 GFRQARQAVAEXXXXXXXXXXXXPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRL 300 GFRQARQAVAE PTLFALCDKP+TAQRVADWLGKNYLQNQEGFVHICRL Sbjct: 241 GFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVADWLGKNYLQNQEGFVHICRL 300 Query: 301 DTAGARVLEN 310 DTAGARVLEN Sbjct: 301 DTAGARVLEN 310 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.321 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 800230 Number of Sequences: 4289 Number of extensions: 32156 Number of successful extensions: 93 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92 Number of HSP's gapped (non-prelim): 1 length of query: 310 length of database: 1,355,879 effective HSP length: 40 effective length of query: 270 effective length of database: 1,184,319 effective search space: 319766130 effective search space used: 319766130 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= thrC, threonine synthase, Escherichia coli O157:H7 (EDL933) (428 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0004, threonine synthase, Escherichia coli K12-MG1655 816 0.0 >b0004, threonine synthase, Escherichia coli K12-MG1655 Length = 428 Score = 816 bits (2108), Expect = 0.0 Identities = 412/428 (96%), Positives = 412/428 (96%) Query: 1 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS Sbjct: 1 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60 Query: 61 AFIGDEIPQEILXXXXXXXXXXXXXXXNVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH 120 AFIGDEIPQEIL NVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH Sbjct: 61 AFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH 120 Query: 121 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV 180 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV Sbjct: 121 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV 180 Query: 181 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQEARNQ 240 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQE RNQ Sbjct: 181 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQETRNQ 240 Query: 241 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA 300 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA Sbjct: 241 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA 300 Query: 301 MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA 360 MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA Sbjct: 301 MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA 360 Query: 361 LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL 420 LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL Sbjct: 361 LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL 420 Query: 421 RKLMMNHQ 428 RKLMMNHQ Sbjct: 421 RKLMMNHQ 428 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1072570 Number of Sequences: 4289 Number of extensions: 43734 Number of successful extensions: 150 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149 Number of HSP's gapped (non-prelim): 1 length of query: 428 length of database: 1,355,879 effective HSP length: 43 effective length of query: 385 effective length of database: 1,171,452 effective search space: 451009020 effective search space used: 451009020 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Z0005, hypothetical protein, Escherichia coli O157:H7 (EDL933) (98 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0005, orf, hypothetical protein, Escherichia coli K12-MG1655 90 7e-020 b2390, orf, hypothetical protein, Escherichia coli K12-MG1655 57 4e-010 >b0005, orf, hypothetical protein, Escherichia coli K12-MG1655 Length = 98 Score = 89.7 bits (221), Expect = 7e-020 Identities = 45/68 (66%), Positives = 45/68 (66%) Query: 1 VKKMQSIXXXXXXXXXXPMATQAAEITLVPSVKLQIGDRDNRGYYXXXXXXXXXXXXKQH 60 VKKMQSI PMA QAAEITLVPSVKLQIGDRDNRGYY KQH Sbjct: 1 VKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQH 60 Query: 61 YEWRGNRW 68 YEWRGNRW Sbjct: 61 YEWRGNRW 68 >b2390, orf, hypothetical protein, Escherichia coli K12-MG1655 Length = 108 Score = 57.4 bits (137), Expect = 4e-010 Identities = 27/64 (42%), Positives = 35/64 (54%) Query: 5 QSIXXXXXXXXXXPMATQAAEITLVPSVKLQIGDRDNRGYYXXXXXXXXXXXXKQHYEWR 64 +S+ P+A A EITL+PS+KLQIGDRD+ G Y ++YEWR Sbjct: 3 RSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWR 62 Query: 65 GNRW 68 NRW Sbjct: 63 KNRW 66 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.319 0.133 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120005 Number of Sequences: 4289 Number of extensions: 2382 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 2 length of query: 98 length of database: 1,355,879 effective HSP length: 38 effective length of query: 60 effective length of database: 1,192,897 effective search space: 71573820 effective search space used: 71573820 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= yaaA, hypothetical protein, Escherichia coli O157:H7 (EDL933) (258 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0006, orf, hypothetical protein, Escherichia coli K12-MG1655 510 e-146 >b0006, orf, hypothetical protein, Escherichia coli K12-MG1655 Length = 258 Score = 510 bits (1313), Expect = e-146 Identities = 256/258 (99%), Positives = 256/258 (99%) Query: 1 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN 60 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN Sbjct: 1 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN 60 Query: 61 AARFHDWQPDFTPENARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP 120 AARFHDWQPDFTP NARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP Sbjct: 61 AARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP 120 Query: 121 LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK 180 LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK Sbjct: 121 LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK 180 Query: 181 PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF 240 PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF Sbjct: 181 PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF 240 Query: 241 DEASSSNGELVFKRYEQR 258 DE SSSNGELVFKRYEQR Sbjct: 241 DEDSSSNGELVFKRYEQR 258 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 664785 Number of Sequences: 4289 Number of extensions: 27271 Number of successful extensions: 66 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 1 length of query: 258 length of database: 1,355,879 effective HSP length: 43 effective length of query: 215 effective length of database: 1,171,452 effective search space: 251862180 effective search space used: 251862180 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= yaaJ, inner membrane transport protein, Escherichia coli O157:H7 (EDL933) (476 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0007, inner membrane transport protein, Escherichia coli K1... 888 0.0 >b0007, inner membrane transport protein, Escherichia coli K12-MG1655 Length = 476 Score = 888 bits (2295), Expect = 0.0 Identities = 446/476 (93%), Positives = 447/476 (93%) Query: 1 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS 60 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS Sbjct: 1 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS 60 Query: 61 FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD 120 FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD Sbjct: 61 FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD 120 Query: 121 VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV 180 VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV Sbjct: 121 VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV 180 Query: 181 TGXXXXXXXXXXXXRGLHGVARLMQGFVPLMAIIWVLTSLVICVINIGQLPHVIWSIFES 240 TG RGLHGVARLMQGFVPLMAIIWVLTSLVICV+NIGQLPHVIWSIFES Sbjct: 181 TGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFES 240 Query: 241 AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTXXXXXXXXXXXXXXXXQGIVQM 300 AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGST QGIVQM Sbjct: 241 AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQM 300 Query: 301 IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA 360 IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA Sbjct: 301 IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA 360 Query: 361 FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA 420 FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA Sbjct: 361 FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA 420 Query: 421 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSRDAWDDVSQE 476 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLS DAWDDVSQE Sbjct: 421 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE 476 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.329 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1231455 Number of Sequences: 4289 Number of extensions: 49852 Number of successful extensions: 217 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 1 length of query: 476 length of database: 1,355,879 effective HSP length: 40 effective length of query: 436 effective length of database: 1,184,319 effective search space: 516363084 effective search space used: 516363084 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= talB, transaldolase B, Escherichia coli O157:H7 (EDL933) (317 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0008, transaldolase B, Escherichia coli K12-MG1655 619 e-179 b2464, transaldolase A, Escherichia coli K12-MG1655 406 e-114 b3946, putative transaldolase, Escherichia coli K12-MG1655 59 8e-010 b0825, putative transaldolase, Escherichia coli K12-MG1655 54 1e-008 >b0008, transaldolase B, Escherichia coli K12-MG1655 Length = 317 Score = 619 bits (1597), Expect = e-179 Identities = 317/317 (100%), Positives = 317/317 (100%) Query: 1 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK 60 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK Sbjct: 1 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK 60 Query: 61 QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN 120 QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN Sbjct: 61 QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN 120 Query: 121 DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG 180 DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG Sbjct: 121 DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG 180 Query: 181 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD 240 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD Sbjct: 181 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD 240 Query: 241 RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR 300 RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR Sbjct: 241 RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR 300 Query: 301 KFAIDQEKLEKMIGDLL 317 KFAIDQEKLEKMIGDLL Sbjct: 301 KFAIDQEKLEKMIGDLL 317 >b2464, transaldolase A, Escherichia coli K12-MG1655 Length = 316 Score = 406 bits (1044), Expect = e-114 Identities = 201/311 (64%), Positives = 240/311 (76%) Query: 3 DKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 62 ++L ++Q+TTVVAD+GDI +++ Y PQDATTNPSL+L AA + +Y LIDDA+AW K+ Sbjct: 2 NELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLSQYEHLIDDAIAWGKKN 61 Query: 63 SNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 122 + QQ+V A DKLAVN G EILK+VPGR+STEVDARLS+D E SI KA+ L+ LY Sbjct: 62 GKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSFDKEKSIEKARHLVDLYQQQ 121 Query: 123 GISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRI 182 G+ RILIKLASTW+GIRAAE+LEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRI Sbjct: 122 GVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRI 181 Query: 183 LDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRL 242 DWY+A Y EDPGV SV IY YYK+H YET+VMGASFR +IL L GCDRL Sbjct: 182 YDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYETIVMGASFRRTEQILALTGCDRL 241 Query: 243 TIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIRKF 302 TIAP LLKEL E + RKL + RPA ++E+EF W+HNQD MAV+KL+EGIR F Sbjct: 242 TIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMSEAEFRWEHNQDAMAVEKLSEGIRLF 301 Query: 303 AIDQEKLEKMI 313 A+DQ KLE ++ Sbjct: 302 AVDQRKLEDLL 312 >b3946, putative transaldolase, Escherichia coli K12-MG1655 Length = 220 Score = 58.5 bits (140), Expect = 8e-010 Identities = 49/166 (29%), Positives = 85/166 (50%), Gaps = 25/166 (15%) Query: 101 LSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS 160 +S D + + +AKRL DA I++K+ T +G+ A + L+KEGI T ++S Sbjct: 61 MSRDAQGMVEEAKRL----RDA---IPGIVVKIPVTSEGLAAIKILKKEGITTLGTAVYS 113 Query: 161 FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYET 220 AQ A AG ++P+V R+ A D G+ +V E+ + H E+ Sbjct: 114 AAQGLLAALAGAKYVAPYVNRV------------DAQGGD-GIRTVQELQTLLEMHAPES 160 Query: 221 VVMGASFRNIGEILE--LAGCDRLTIAPALLKELAES---EGAIER 261 +V+ ASF+ + L+ LAGC+ +T+ + +++ + E AIE+ Sbjct: 161 MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEK 206 >b0825, putative transaldolase, Escherichia coli K12-MG1655 Length = 244 Score = 54.3 bits (129), Expect = 1e-008 Identities = 59/249 (23%), Positives = 103/249 (40%), Gaps = 59/249 (23%) Query: 2 TDKLTSLRQYTTVVADTGDIAAMK----LYQPQDATTNPSLILNAAQIPEYRKLIDDAVA 57 +DK LR + DT D+ A+K ++ TTNPS+I +K +D + Sbjct: 15 SDKKYILRMVMELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAG------KKPLDVVLP 68 Query: 58 WAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIK 117 + + GR+ +V A + E + A +L Sbjct: 69 QLHEAMGGQ------------------------GRLFAQVMATTA---EGMVNDALKLRS 101 Query: 118 LYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISP 177 + D I++K+ T +G+ A + L+ EGI T ++ AQ A AG ++P Sbjct: 102 IIAD-------IVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAP 154 Query: 178 FVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILE-- 235 +V RI G+ +V++++Q K H + V+ ASF+ + L+ Sbjct: 155 YVNRI-------------DAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCL 201 Query: 236 LAGCDRLTI 244 LAGC+ +T+ Sbjct: 202 LAGCESITL 210 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879 Number of sequences in database: 4289 Lambda K H 0.316 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 788985 Number of Sequences: 4289 Number of extensions: 31447 Number of successful extensions: 102 Number of sequences better than 1.0e-003: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 5 length of query: 317 length of database: 1,355,879 effective HSP length: 45 effective length of query: 272 effective length of database: 1,162,874 effective search space: 316301728 effective search space used: 316301728 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mog, required for the efficient incorporation of molybdate into molybdoproteins, Escherichia coli O157:H7 (EDL933) (195 letters) Database: K12-Prot 4289 sequences; 1,355,879 total letters Score E Sequences producing significant alignments: (bits) Value b0009, required for the efficient incorporation of molybdate... 384 e-108 b0782, molybdopterin biosynthesis, protein B, Escherichia co... 57 9e-010 >b0009, required for the efficient incorporation of molybdate into molybdoproteins, Escherichia coli K12-MG1655 Length = 195 Score = 384 bits (986), Expect = e-108 Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE 60 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE Sbjct: 1 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE 60 Query: 61 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV 120 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV Sbjct: 61 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV 120 Query: 121 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV 180 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV Sbjct: 121 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV 180 Query: 181 VAAFRPKSARRDVSE 195 VAAFRPKSARRDVSE Sbjct: 181 VAAFRPKSARRDVSE 195 >b0782, molybdopterin biosynthesis, protein B, Escherichia coli K12-MG1655 Length = 170 Score = 57.4 bits (137), Expect = 9e-010 Identities = 32/106 (30%), Positives = 53/106 (49%), Gaps = 1/106 (0%) Query: 42 LETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGE 101 ++ ++ + + I + + +VL TGGTG D P+A L + DRE+ GFGE Sbjct: 45 VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGE 104 Query: 102 QMRQISLHFVPTAIL-SRQVGVIRKQALILNLPGQPKSIKETLEGV 146 R +S + T+ L SR V + + LI +PG K+ + E + Sbjct: 105 VFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENI 150 Database: K12-Prot Posted date: Sep 10, 2002 3:29 PM Number of letters in database: 1,355,879